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1 November 2005 Photophysical Behavior of a Dimeric Cyanine Dye (BOBO-1) Within Cationic Liposomes
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Abstract

This study is aimed at establishing optimal conditions for the use of 2,2′-[1,3-propanediylbis[(dimethyliminio)-3,1-propanediyl-1(4H)-pyridinyl-4-ylidenemethy-lidyne]]bis[3-methyl]-tetraiodide (BOBO-1) as a fluorescent probe in the characterization of lipid/DNA complexes (lipoplexes). The fluorescence spectra, anisotropy, fluorescence lifetimes and fluorescence quantum yields of this dimeric cyanine dye in plasmid DNA (2694 base pairs) with and without cationic liposomes (1,2-dioleoyl-3-trimethylammonium-propane [DOTAP]), are reported. The photophysical behavior of the dye in the absence of lipid was studied for several dye/DNA ratios using both supercoiled and relaxed plasmid. At dye/DNA ratios (d/b) below 0.01 the fluorescence intensity increases linearly, whereas lifetime and anisotropy values of the dye are constant (τ̄ ∼ 2.5 ns and <r> = 0.20). By agarose gel electrophoresis it was verified that up to d/b = 0.01 DNA conformation is not considerably modified, whereas for d/b = 0.05–0.06 a single heavy band appears on the gel. For these and higher dye/DNA ratios the fluorescence intensity, anisotropy and average lifetime values decrease with an increase in BOBO-1 concentration. When cationic liposomes are added to the BOBO-1/DNA complex, an additional effect is noticed: The difference in the environment probed by BOBO-1 bound to DNA leads to a decrease in quantum yield and average lifetime values, and a redshift is apparent in the emission spectrum. For fluorescence measurements including energy transfer (FRET), a d/b ratio of 0.01 seems to be adequate because no considerable change on DNA conformation is detected, a considerable fluorescent signal is still measured after lipoplex formation, and energy migration is not efficient.

Catarina Madeira, Aleksander Fedorov, M. Raquel Aires-Barros, Manuel Prieto, and Luís M. S. Loura "Photophysical Behavior of a Dimeric Cyanine Dye (BOBO-1) Within Cationic Liposomes," Photochemistry and Photobiology 81(6), 1450-1459, (1 November 2005). https://doi.org/10.1562/2005-03-16-RA-464
Received: 16 March 2005; Accepted: 1 July 2005; Published: 1 November 2005
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