The genus Baripus Dejean is a carabid beetle endemic to southern South America, inhabiting grassland and shrub habitats in mountain and lowland areas. In this work, the phylogeny of the genus is updated and new species restricted to isolated mountains from the Patagonia Biogeographic Province are described. The cladistic analysis showed that the new mountain species comprise a monophyletic clade with five other species. Within this group, the species are arranged in two internal clades. Each clade contains one or two lowland species with a wide distribution range and the remaining species with microendemic distribution on each mountain system. Their distribution pattern suggests that mountain species of Baripus could have originated since (by) the end of the Cenozoic when the mountains uplifted and acted as a refuge for populations of lowland species that remained isolated and later became differentiated from one another. Based on morphological and cytochrome c oxidase subunit I molecular data, Baripus (Cardiophthalmus) palauco, sp. nov., Baripus (Cardiophthalmus) tromen, sp. nov., Baripus (Cardiophthalmus) aucamahuida, sp. nov. and Baripus (Cardiophthalmus) payun, sp. nov. are described and a key to all currently known species of Baripus (Cardiophthalmus) is provided.