Modern North American carnivorous mammal assemblages consist of species from a single clade: the Carnivora. Carnivorans once coexisted with members of other meat-eating clades, including the creodonts (Hyaenodontida and Oxyaenida). Creodonts, however, went extinct in North America during the late Eocene and early Oligocene, potentially due to niche overlap and resource competition with contemporary carnivorans. In this study, we employ a community ecology approach to understand whether the dietary niches of coexisting creodonts and carnivorans overlapped during the late Eocene (Chadronian North American Land Mammal Age), a time when creodonts were dwindling and carnivorans were diversifying. We quantify niche overlap based on inferences of diet from carnassial tooth shape estimated using Orientation Patch Count, Dirichlet's Normal Surface Energy, and linear dental measurements as well as from body mass for all species in the Calf Creek Local Fauna of Cypress Hills, Saskatchewan (Treaty 4 land). Although creodonts and carnivorans shared characteristics of their carnassial tooth shape, suggesting similar chewing mechanics and feeding habits, we find that marked differences in body size likely facilitated niche partitioning, at least between the largest creodonts and carnivorans. Calculations of prey focus masses and prey mass spectra indicate that only the smallest creodont may have experienced significant competition for prey with the coeval carnivorans. We suggest that the ultimate extinction of creodonts from North America during the late Eocene and Oligocene was unlikely to have been driven by factors related to niche overlap with carnivorans.

Most extinctions worldwide have occurred on islands, primarily due to interactions with exotic species, but rarely due to interactions among endemic species. This potential exists on two of the California Channel Islands, Santa Cruz and Santa Rosa, as endemic island spotted skunks (Spilogale gracilis amphiala) appear to have rapidly declined to rarity, possibly due to interference competition with endemic island foxes (Urocyon littoralis). Niche partitioning is expected in response to interference competition; hence, it is surprising that skunks and foxes show extensive overlap in macrohabitat use and circadian activity. However, the role of microhabitat associations and fine-scale temporal activity in facilitating coexistence of the two species has not been explored. We evaluated microhabitat associations of island spotted skunks and island foxes across both islands using data from live traps and wildlife cameras collected during 2015–2017, and we analyzed fine-scale temporal activity using camera data from 2016 and 2017. On both islands, skunks had a positive response to ground-level cover provided by rugged topography or woody vegetation such as shrubs or trees, whereas foxes had a weak or negative response, suggesting partitioning of these microhabitat characteristics. Additionally, on both islands the peak in timing of skunk activity offset the peak for foxes, which implies that skunks use fine-scale adjustments in activity to avoid foxes. Past grazing by exotic herbivores likely reduced habitat refuges for skunks; however, as vegetation on both islands recovers, regrowth of shrubs and trees may provide cover that will improve prospects for coexistence of island spotted skunks and island foxes.

The Reithrodontomys tenuirostris species group is considered “the most specialized” within the genus Reithrodontomys from morphological and ecological perspectives. Previous studies based on molecular data recommended changes in the taxonomy of the group. In particular, R. microdon has been the most taxonomically questioned, with the suggestion that it constitutes a complex of cryptic species. We analyzed the phylogenetic relationships of the R. tenuirostris species group using DNA sequences from the mitochondrial Cytochrome b gene and Intron 7 of the nuclear beta fibrinogen gene. In addition, divergence times were estimated, and possible new taxa delimited with three widely used species delimitation methods. Finally, possible connectivity routes based on shared haplotypes were tested among the R. microdon populations. All species were recovered as monophyletic with the exception of R. microdon, whose individuals were grouped into four different haplogroups, one of which included specimens of R. bakeri. Diversification within the R. tenuirostris species group began about 3 Ma, in the Pleistocene. The bGMYC and STACEY delimitation methods were congruent with each other, delimiting at the species-level each haplogroup within R. microdon, while the mPTP suggested a greater number of species. Moreover, none of the haplogroups showed potential connectivity routes between them, evidencing lack of gene flow. Our results suggest the existence of a higher number of species in the R. tenuirostris group, because we show that there are four species within what is currently recognized as R. microdon.

Different groups of taxa exhibit varying degree of climatic niche conservatism or divergence due to evolutionary constraints imposed on taxa and distributional relationships among them. Herein, we explore to what extent regional environmental conditions that taxa occupy affect climatic niche overlap between pairs of congeneric species of Peromyscus mice exhibiting allopatric, parapatric, or sympatric distributions. We used Bayesian generalized linear mixed models to identify environmental variables that best explain differences in climatic niche overlap between species. Our results suggest that regional environmental conditions explain 13–44% of variation in climatic niche overlap. Specifically, allopatric and parapatric species pairs are more likely to occupy similar climatic niches in areas that are topographically less complex but with more complex habitats. Sympatric species are more likely to occupy similar climatic niches in areas that promote local niche partitioning (topographically less complex, warmer winter temperatures, higher precipitation, and higher habitat complexity on a local scale). By understanding the relationship between regional environmental conditions and niche overlap, we highlight how differences in geography can contribute to shaping niches of congeneric species.

Northeastern México is one of the most diverse regions in the country with high mammal richness. This region also sits on the northern periphery of the geographic distribution of ocelots (Leopardus pardalis), which are listed as endangered in México. Ocelot ecology in northeastern México is poorly known at local and landscape levels, especially in the ecologically rich temperate sierras, a perceived stronghold for ocelots. We used an occupancy approach to estimate ocelot-habitat use in Tamaulipan thornshrub and tropical deciduous forests and a spatially explicit capture–recapture (SECR) framework to estimate density of ocelots in the northern edge of the Sierra Tamaulipas, México. From May to December 2009, we conducted two camera trap surveys (summer: 20 camera stations; fall: 58 camera stations) on Rancho Caracol and Rancho Camotal, north of the Rio Soto de La Marina. We found ocelot detections were higher in areas with increasing patch density of tropical deciduous forest and habitat use was greater in Tamaulipan thornshrub and tropical deciduous forests with lower edge densities. Ocelot densities varied by sex, with females achieving greater densities (7.88 ocelots/100 km² [95% CI: 4.85–12.81]) than males (3.81 ocelots/100 km² [95% CI: 1.96–7.43]). Ocelots were averse to areas with high densities of edge cover in each woody community, supporting the notion of a forest patch interior species. Despite the study occurring 11 years ago, population densities were also among the highest reported in México using spatially explicit capture–recapture methods, The high ecological integrity of the habitat within the Sierra de Tamaulipas, recent protection as a Biosphere Reserve, and remote rugged terrain suggest long-term security of the ocelot population in this region.

Ocelots (Leopardus pardalis) are a wide-ranging felid species, occurring from southern United States to northern Argentina. They occupy various habitats and are usually considered the most abundant wild cat species in the Neotropics. However, genetic studies that include free-ranging Mesoamerican ocelots are rare and generally based on small sample sizes. This is the first conservation genetics study on ocelots in Costa Rica and the second one in Mesoamerica that has conducted a genetic assessment of the species at a countrywide scale. We evaluated genetic diversity and population structure of ocelots using 15 microsatellite loci in 28 successfully genotyped individuals from throughout the country. We also compared genetic diversity of Costa Rican ocelots with that of jaguars (Panthera onca) and pumas (Puma concolor) in the country, and with ocelots in Belize. Genetic diversity of ocelots in Costa Rica was relatively high as measured by rarified allelic richness (A_R = 5.50 ± 1.36) and expected heterozygosities (H_E = 0.79 ± 0.08). We did not detect patterns of genetic substructure, suggesting high levels of gene flow throughout the country and no strong barriers to movement. As expected, genetic diversity of Costa Rican ocelots was higher than co-occurring jaguars and pumas. Additionally, levels of genetic diversity were slightly higher in Costa Rican ocelots when compared with their counterparts in Belize, confirming the south to north decrease in genetic diversity reported in other studies. Our study provides critical baseline information to understand the status of wild ocelot populations in Costa Rica. Future studies on ocelots and other threatened or keystone species should also integrate genetic monitoring and conservation genetics analysis to properly inform management decisions, guarantee their long-term survival, and improve the resilience of ecosystems.

The yellow-shouldered bat, Sturnira parvidens (Phyllostomidae), is an abundant and widespread species in southern North America and Mesoamerica. Despite its important ecological role, no genomic resources exist for this species. Using low-coverage short Illumina 150 bp pair-end reads sequencing, this study reports the mitochondrial chromosome and nuclear repetitive elements, including microsatellites, in S. parvidens. The mitochondrial genome of S. parvidens is 16,612 bp in length and is comprised of 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. Repetitive elements constituted ∼67% of the nuclear genome while ∼33% of the genome represented single- or low-copy sequences. A moderate proportion of repetitive sequences (31% putative families) could not be assigned to known repeat element families. Considering only annotated repetitive elements, the most ubiquitous repetitive elements belonged to Class I-LINE and Satellite DNA, which were considerably more abundant than Class I-LTR elements and Class II-DNA transposons (TcMar-Mariner and hAT-Charlie). A total of 193 microsatellites were identified.

Little brown bats (Myotis lucifugus) are a widely distributed species in North America that have been decimated by the fungal disease white-nose syndrome. As such, little brown bats are the focus of monitoring and research initiatives that often include capturing and handling free-ranging individuals. We examined the stress response of 198 adult female little brown bats after being captured from three bat houses, during the summer. Our objective was to inform best practices to researchers capturing and handling bats in the wild. We compared the stress response among bats held for <3 min (baseline), 15–30 min, or >30 min, and then among bats held alone or in a group with conspecifics. We measured the levels of plasma total and free cortisol, maximum corticosteroid binding capacity (MCBC), and blood glucose. Relative to baseline, total and free cortisol levels were significantly higher in bats held for 15–30 min and higher still in those held for > 30 min. Blood glucose levels were elevated after >30 min of holding. MCBC levels showed no differences among holding times. We detected a weak effect of social holding condition, with solitary-held bats having lower total cortisol levels than group-held bats, but MCBC, free cortisol, and blood glucose levels showed no effect of social holding condition. Our findings demonstrate that capture time should be minimized and suggest that little brown bats should be handled and released within 30 min of capture as means of reducing stress. Further, solitary holding did not appear to increase stress measures, which supports holding bats individually after capture, instead of in groups, to reduce risk of pathogen and parasite transmission.

The individual identification of animals is essential for long-term population ecology studies. Injuries and tag loss can negatively impact animal welfare and parameter estimates. We used time-to-failure curves and multistate mark-recapture models to estimate injury rates, body condition decline, tag loss and survival probabilities associated with two tags commonly used in bats: metallic arm bands and steel ball chain collars. We monitored two colonies of Carollia perspicillata at União Biological Reserve, southeastern Brazil, from 2013 to 2019. Every other month, we marked individuals with arm bands, collars or both. Collars did not cause noticeable injuries, but were lost at a higher rate than arm bands (1.5–2.5 times). The arm band-related injury probability between captures was ∼ 0.2, and after 17 months half the marked animals developed injuries. Animals marked as juveniles were less likely to get injured than adults. Injuries were associated with a lower body condition in females. Body condition was positively associated with apparent survival; however, a direct effect of arm band injuries on survival estimates was not observed. The tag loss rates caused a negative bias in survival estimates. Mark-recapture studies should evaluate the efficacy of the marking technique, accounting for potential animal injury, tag loss, and bias in parameter estimation. Marking individuals should be limited to studies that monitor species with high recapture probability, using the least harmful tags possible, and balancing the burden to the animals with the potential to generate knowledge.

Large high-severity fires are increasing in frequency in many parts of the world, including the coniferous forests of the Sierra Nevada mountains. These “megafires” alter vegetation and environmental conditions in forests, yet their impacts on native wildlife remain poorly understood. Bats play an important role in forest ecosystems, but their responses to megafires likewise are understudied. We investigated bat responses to the King Fire, a megafire that burned nearly 40,000 ha within the Eldorado National Forest in 2014, half of it at high severity. From June to September 2017, we used remote acoustic recorders to survey bats at 26 sites with varying fire severity (unburned, mixed, and high severity). We analyzed data with Royle–Nichols occupancy models to investigate how bat space use was influenced by megafires, and whether this response was driven by prey availability, fire severity, or fire-altered habitat conditions. We calculated prey species richness, biomass, and abundance, from moths sampled with blacklight surveys. Vegetation covariates included tree density, canopy cover, and shrub density, measured along vegetation transects. To capture general effects of fire, we also included fire severity and the percentage of dead trees as potential covariates on space use. Prey variables were highest in unburned forests, were the most common predictors of, and generally had positive effects on bat space use. Responses to tree density and canopy cover varied by species; the most common vegetation covariate, shrub density, had weak positive effects on bat space use. In spite of the varying prey and vegetation conditions across fire severity categories, most bats showed weak to no response in space use to fire severity and tree mortality. We attribute this to the highly mobile nature of bats, which reduces the impact of potentially negative local conditions.

Predator diet can be influenced by competition and intraguild predation, leading to resource partitioning and/or avoidance. For sympatric, endemic predators, these processes form as predator species coevolve, facilitating coexistence. However, when novel predator interactions occur, significant dietary overlap could create acute levels of competition leading to intraguild predation and population extinction, or accelerated changes in diet and/or spatial and temporal avoidance. We measured diet, intraguild predation, and spatial and temporal overlap in two predator species in a novel predator interaction: the western quoll (Dasyurus geoffroii), a small, native carnivore reintroduced to semi-arid Australia, and the domestic cat (Felis catus), a larger introduced carnivore already resident at the release site. Both species exhibited high dietary overlap and fed on mammals, reptiles, birds, and invertebrates. Cats included quolls in their diet. Quoll diet was broader (including carrion, bats, and plant material) and flexible, changing significantly with age, sex, and season. Introduced rabbit was the most common prey item recorded for both species (frequency of occurrence = 40–50%). However, quolls consumed rabbits in relation to their availability while rabbit consumption in cats was unrelated to availability suggesting a stronger dependence on rabbit prey. Quoll diet did not change over time since release and they did not spatially or temporally avoid cats. However, cats were significantly spatially associated with rabbits while quolls were not, suggesting higher predation efficacy in quolls possibly due to their smaller body size enabling them to catch rabbits inside warrens. Despite high dietary overlap and intraguild predation, the quoll's broad and flexible diet and high predation efficacy appeared to assist in facilitating coexistence and reducing competition in this novel predator interaction. This dietary flexibility may be harnessed to improve conservation outcomes: reducing introduced rabbits in our study area could naturally reduce feral cat populations while having less impact on native quolls.

Rodents use direct and/or indirect cues of predators to assess predation risk. The responses to these cues are well studied with regard to mammalian predators, but less understood with regard to reptilian predators. These responses are of particular importance in tropical and subtropical regions where reptile diversity is high and the likelihood of establishment of invasive reptilian predators also is high. We hypothesized that rodents would respond to direct scent cues of snake predators and that rodents would show greater aversion to scents of native snake predators than non-native snake predators. To assess this, scents of three snake species, two native and one non-native, and a non-snake control odor were distributed in Sherman live traps using a randomized block design. A total of 69 rodents representing four species were captured. Responses varied by species reinforcing that some species utilize indirect cues to assess predation risk, whereas others use direct cues. Moreover, one species (Neotoma floridana) showed a preference for non-native Python scent, indicating a lack of the appropriate anti-predator behavior, suggesting that some native rodents are more at risk of attack from invasive snakes than other native rodents.

Differential habitat use in sympatric species can provide insight into how behavior relates to morphological differences and as a general model for the study of biological adaptations to different functional demands. In Amazonia, closely related sympatric tamarins of the genera Saguinus and Leontocebus regularly form stable mixed-species groups, but exhibit differences in foraging height and locomotor activity. To test the hypothesis that two closely related species in a mixed-species group prefer different modes of leaping regardless of the substrates available, we quantified leaping behavior in a mixed-species group of Saguinus mystax and Leontocebus nigrifrons. We studied leaping behavior in relation to support substrate type and foraging height in the field for 5 months in the Amazonian forest of north-eastern Peru. Saguinus mystax spent significantly more time above 15 m (79%) and used predominantly horizontal and narrow supports for leaping. Leontocebus nigrifrons was predominantly active below 10 m (87%) and exhibited relatively more trunk-to-trunk leaping. Both species preferred their predominant leaping modes regardless of support type availability in the different forest layers. This indicates that the supports most commonly available in each forest layer do not determine the tamarins' leaping behavior. This apparent behavioral adaptation provides a baseline for further investigation into how behavioral differences are reflected in the morphology and species-specific biomechanics of leaping behavior and establishes callitrichid primates as a model well-suited to the general study of biological adaptation.

Movement is a fundamental characteristic of animals, but challenging to measure noninvasively. Noninvasive methods for measuring travel have different weaknesses, so multiple techniques need to be applied multiple techniques for reliable inferences. We used two methods, direct tracking and camera trapping, to examine the variation in time and seasonal differences in movement rates of mandrills (Mandrillus sphinx), an elusive primate that lives in large groups in central Africa. In a 400-km² rainforest area in Moukalaba-Doudou National Park, Gabon, we tracked unidentified groups 46 times from 2009 to 2013. We systematically placed 157 terrestrial camera traps in the same area from 2012 to 2014 and recorded groups 309 times. Generalized additive mixed models (GAMMs) of the tracking data indicated that the group travel speed varied with time and season. In the fruiting season, the movement rate fluctuated with time in a bimodal pattern, whereas in the nonfruiting season, it increased monotonously with time. The predicted day range was longer in the fruiting season (6.98 km) than in the nonfruiting season (6.06 km). These seasonal differences suggest responses to changes in food resources and temperature. Camera-trap detection rates showed similar temporal and seasonal patterns to the tracking data, allowing us to generalize our findings to the population level. Moreover, cameras never detected mandrills at night, and we observed that they slept high in trees and hardly moved until the next morning, all suggesting their strict avoidance of nighttime movement. This study demonstrated the significance of the multiple-method approach in drawing robust conclusions on temporal patterns of animal movement.

Antlers are unique structures because they grow rapidly and are cast annually, representing an important energetic and mineral cost for deer. Variables related to the timing of antler growth, such as date of antler casting and length of growth period, therefore, should be affected by somatic resources and availability of food. We examined the effects of body and antler weight, age, and climatic variables, on antler casting date and the period of time antlers were grown as well as possible random effects of individual, year, cohort, and pedigree, based on 244 antlers in a population of 109 males of Iberian red deer (Cervus elaphus) over a 17-year study from 1999 to 2016. Body weight affected casting date, with heavier males casting antlers earlier than lighter males. Antlers also grew faster and were cast earlier among older males than young males. Antler weight influenced casting date and the duration of the growth period: males with heavier antlers cast them earlier and grow them faster than males with light antlers. Nevertheless, age and antler weight interacted; as such, older males grew their antlers slower and delay casting date because they produce heavier antlers, in contrast to younger males, where those with the heaviest antlers grow them faster and cast first. The date of the end of antler growth also influenced casting date, so that antlers that took the longest to develop were cast later than those that finished growing early. We conclude that older and heavier males cast their antlers earlier and grow them faster than younger and lighter males, likely to correlate the subsequent antler growth with the spring peak in plant nutrients, but that this early development is limited physiologically by the size of the antlers.

Congeneric species often share ecological niche space resulting in competitive interactions that either limit co-occurrence or lead to niche partitioning. Differences in fundamental nutritional niches mediated through character displacement or isolation during evolution are potential mechanisms that could explain overlapping distribution patterns of congenerics. We directly compared nutritional requirements and tolerances that influence the fundamental niche of mule (Odocoileus hemionus) and white-tailed deer (O. virginianus), which occur in allopatry and sympatry in similar realized ecological niches across their ranges in North America. Digestible energy and protein requirements and tolerances for plant fiber and plant secondary metabolites (PSMs) of both deer species were quantified using in vivo digestion and intake tolerance trials with six diets ranging in content of fiber, protein, and PSMs using tractable deer raised under identical conditions in captivity. We found that compared with white-tailed deer, mule deer required 54% less digestible protein and 21% less digestible energy intake per day to maintain body mass and nitrogen balance. In addition, they had higher fiber, energy, and dry matter digestibility and produced glucuronic acid (a byproduct of PSM detoxification) at a slower rate when consuming the monoterpene α-pinene. The mule deers' enhanced physiological abilities to cope with low-quality, chemically defended forages relative to white-tailed deer might minimize potential competitive interactions in shared landscapes and provide a modest advantage to mule deer in habitats dominated by low-quality forages.

Herbivores making space use decisions must consider the trade-off between perceived predation risk and forage quality. Herbivores, specifically snowshoe hares (Lepus americanus), must constantly navigate landscapes that vary in predation risk and food quality, providing researchers with the opportunity to explore the factors that govern their foraging decisions. Herein, we tested predictions that intersect the risk allocation hypothesis (RAH) and optimal foraging theory (OFT) in a spatially explicit ecological stoichiometry framework to assess the tradeoff between predation risk and forage quality. We used individual and population estimates of snowshoe hare (n = 29) space use derived from biotelemetry across three summers. We evaluated resource forage quality for lowbush blueberry (Vaccinium angustifolium), a common and readily available forage species within our system, using carbon:nitrogen and carbon:phosphorus ratios. We used habitat complexity to proxy perceived predation risk. We analyzed how forage quality of blueberry, perceived predation risk, and their interaction impact the intensity of herbivore space use. We used generalized mixed effects models, structured to enable us to make inferences at the population and individual home range level. We did not find support for RAH and OFT. However, variation in the individual-level reactions norms in our models showed that individual hares have unique responses to forage quality and perceived predation risk. Our finding of individual-level responses indicates that there is fine-scale decision-making by hares, although we did not identify the mechanism. Our approach illustrates spatially explicit empirical support for individual behavioral responses to the food quality–predation risk trade-off.

Ecological studies of rodent species, especially as reservoirs of zoonoses, can identify spatiotemporal conditions associated with irruptions of abundances, as well as predict areas and times with higher risk of disease transmission. The aims of this research were to describe and identify (i) the rodent community composition; (ii) their population structure and breeding season; (iii) temporal and spatial variations in their population abundance; and (iv) the environmental factors associated with these variations on islands of upper Paraná River Delta, a zone of endemism for hantavirus pulmonary syndrome (HPS) in Argentina (Entre Ríos and Santa Fe provinces). We carried out seasonal surveys over 3 years (2014–2017) with live capture traps on seven islands (natural protected areas and under livestock grazing). Three hundred seventy-seven sigmodontine rodents of seven species were captured. While the maximum richness was seven, only four species coexisted at most on an island at the same time. Although changes in reproduction were detected throughout the year, seasonality, land use, and vegetation structure did not explain changes in abundance of rodents. Rodent abundances were affected mainly by flooding-related factors and meteorological conditions (rainfall and temperatures). The recovery of rodent populations after river flooding was species-specific and heterogeneous. The abundance of Oxymycterus rufus and Akodon azarae was affected by El Niño Southern Oscillation (ENSO); A. azarae did not recover after the flood at least during the study period. After the flood, populations of Oligoryzomys flavescens, the reservoir of HPS, also declined; however, this species' populations were the first to recover its numbers, becoming dominant in the post-flood rodent community.