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1 April 2021 KOBUVIRUS DETECTION IN THE CRITICALLY ENDANGERED PYGMY HOG (PORCULA SALVANIA), INDIA
Yashpal Singh Malik, Sudipta Bhat, Shubhankar Sircar, Atul Kumar Verma, Nagendra Nath Barman, Parag Jyoti Deka, Souvik Ghosh, Gábor Reuter, Kuldeep Dhama
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Abstract

Pygmy hogs (Porcula salvania) are the smallest and rarest wild suid. It is categorized as a Critically Endangered species as per the Red List of the International Union for Conservation of Nature. This study reports the first detection of a single-stranded RNA virus species, Aichivirus C, belonging to the genus Kobuvirus (KobV) and the family Picornaviridae, in pygmy hogs. KobV species are identified as a cause of acute gastroenteritis among children in India. As of now, there exists no report on the detection of KobV in animals from India. We used a detection assay based on reverse transcription–polymerase chain reaction for KobV screening in pygmy hogs from a conservation center in India. The 3D polymerase gene–based molecular analysis revealed KobV presence in the Indian wild suid, pygmy hogs. Of the 15 samples tested, three were found positive for picornaviruses and were negative for rotavirus A, rotavirus C, astrovirus, picobirnavirus and caliciviruses. Nucleotide-based sequence analysis of the partial 3D polymerase gene revealed close identity with porcine KobV from the Czech Republic (JX232619, 90.6%–91.6%) and Hungary (NC_011829, 89.8%–91.6%), wherein one of the current study strains clustered with the Czech Republic JX232619 strain in the phylogenetic tree. Further investigation of the role of KobV in health and disease of pygmy hogs is warranted.

Copyright 2021 by American Association of Zoo Veterinarians
Yashpal Singh Malik, Sudipta Bhat, Shubhankar Sircar, Atul Kumar Verma, Nagendra Nath Barman, Parag Jyoti Deka, Souvik Ghosh, Gábor Reuter, and Kuldeep Dhama "KOBUVIRUS DETECTION IN THE CRITICALLY ENDANGERED PYGMY HOG (PORCULA SALVANIA), INDIA," Journal of Zoo and Wildlife Medicine 52(1), 343-347, (1 April 2021). https://doi.org/10.1638/2019-0104
Accepted: 18 September 2020; Published: 1 April 2021
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