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1 August 2003 On the Formation of Cyclobutane Pyrimidine Dimers in UV-irradiated DNA: Why are Thymines More Reactive?
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Abstract

The reaction pathways for thermal and photochemical formation of cyclobutane pyrimidine dimers in DNA are explored using density functional theory techniques. Although it is found that the thermal [2 2] cycloadditions of thymine thymine (T T → T⋄T), cytosine cytosine (C C → C⋄C) and cytosine thymine (C T → C⋄T) all are similarly unfavorable in terms of energy barriers and reaction energies, the excited-state energy curves associated with the corresponding photochemical cycloadditions display differences that—in line with experimental findings—unanimously point to the predominance of T⋄T in UV-irradiated DNA. It is shown that the photocycloaddition of thymines is facilitated by the fact that the S1 state of the corresponding reactant complex lies comparatively high in energy. Moreover, at a nuclear configuration coinciding with the ground-state transition structure, the excited-state energy curve displays an absolute minimum only for the T T system. Finally, the T T system is also associated with the most favorable excited-state energy barriers and has the smallest S2–S0 energy gap at the ground-state transition structure.

Bo Durbeej and Leif A. Eriksson "On the Formation of Cyclobutane Pyrimidine Dimers in UV-irradiated DNA: Why are Thymines More Reactive?," Photochemistry and Photobiology 78(2), 159-167, (1 August 2003). https://doi.org/10.1562/0031-8655(2003)078<0159:OTFOCP>2.0.CO;2
Received: 24 April 2003; Accepted: 1 May 2003; Published: 1 August 2003
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