Globally limited to 45,000 km², salt marshes and their endemic species are threatened by numerous anthropogenic influences, including sea-level rise and predator pressure on survival and nesting success. Along the Atlantic coast of North America, Seaside (Ammospiza maritima) and Saltmarsh (A. caudacuta) sparrows are endemic to salt marshes, with Saltmarsh Sparrows declining by 9% annually. Because vital rates and factors affecting population persistence vary for both species, local estimates are necessary to best predict population persistence in response to management actions. We used a metapopulation model to estimate the population viability of the breeding Seaside and Saltmarsh sparrow populations in coastal New Jersey over a 42-yr period. We incorporated empirical data on the vital rates and abundances of these populations and simulated the effect of low (0.35 m) and high (0.75 m) levels of sea-level rise. We found that the Seaside Sparrow population persisted under both sea-level rise scenarios; however, the Saltmarsh Sparrow population reached a quasi-extinction threshold within 20 yr. Using the same framework, we modeled potential management scenarios that could increase the persistence probability of Saltmarsh Sparrows and found that fecundity and juvenile survival rates will require at least a 15% concurrent increase for the local population to persist beyond 2050. Future field research should evaluate the feasibility and effectiveness of management actions, such as predator control, for increasing Saltmarsh Sparrow vital rates in order to maintain the species in coastal New Jersey.