Some feline intestinal parasites such as Toxocara, Giardia, and Cryptosporidium can spread to humans through feces. Therefore, it is important to prevent exposure of family members by screening cat fecal samples twice per year for potential treatment regimes. This study was initiated to compare and identify gastrointestinal parasites of domestic and stray cats (Felis domesticus) in Baghdad City, Iraq. Parasite eggs and oocysts were identified under light microscopy by applying standard laboratory techniques (flotation and sedimentation). Overall, 59 of 121 (48.7%) fecal samples were positive for intestinal parasites. The rate of infection by Toxoplasma gondii was (3.31%), Isospora spp. (6.61%), Cryptosporidium spp. (31.4%), and Toxocara spp. (1.65%). Four percent of domestic and stray cats were infected with Isospora and Cryptosporidium and 2% were infected with Isospora, Cryptosporidium, and Toxoplasma. The prevalence of infected males (37%) was higher than for females (12%) during October and November. The prevalence of stray cats (30.5%) was higher than for domestic cats (18.8%) in February (45.4%). The diversity of parasites found during this study suggests that additional surveys and proper control programs are necessary to decrease the risk of zoonotic disease transmission.