In temperate ecosystems, hibernation allows bats to survive long periods of limited prey and water availability during colder months. Despite the extended amount of time some bats spend in hibernation, researchers have only recently been able to study the hibernation ecology of bats under natural conditions. With the emergence of white-nose syndrome (WNS), a mysterious disease presently killing large numbers of bats during the hibernation period in the northeastern United States, expanding our knowledge of hibernation ecology and natural history has become more crucial. To collect such data, we used temperature-sensitive radio transmitters and data loggers to monitor the skin temperatures (T_sk) of 6 bats (5 Myotis lucifugus [Little Brown Bat], and 1 Myotis septentrionalis [Northern Long-eared Bat]) hibernating in Mount Aeolus Cave, VT in late winter 2008. We recorded Ts_k every 14 minutes for the life of the transmitters. We were able to monitor T_sk from near ambient temperatures to above 30 °C Arousals occurred immediately before the signals were lost and at a time of increased numbers of bats observed on the landscape, thereby suggesting the emergence (and subsequent death) of bats. Our observations provide first data on the hibernating ecology of WNS-affected bats under natural conditions.