A new species, Gastrodia takeshimensis Suetsugu (Orchidaceae: Epidendroideae, Gastrodieae) from Takeshima Island, Kagoshima Prefecture, Japan, is described and illustrated. Its elongated corolla tube suggests a close affinity to G. nipponica, but it is easily distinguished from G. nipponica by its narrower and enclosed perianth tube, a lip that is joined with the perianth tube without any appendage, and a taller inflorescence during the flowering period.